Publications

An overview of the open access publications can also be found at the repository of the University of Groningen: https://research.rug.nl/en/projects/olife-fellowship-programme
No. Type Title Authors Title of the Journal/Proc./Book Year Number, date or freq. of the Journal/Proc./Book DOI
1 Article in Journal Ancestral-sequence reconstruction unveils the structural basis of function in mammalian FMOs Callum R Nicoll, Gautier Bailleul, Filippo Fiorentini, María Laura Mascotti, Marco W Fraaije*, Andrea Mattevi Nature Structural & Molecular Biology 2019 vol 27 10.1038/s41594-019-0347-2
2 Article in Journal Structural consequences of BMPR2 kinase domain mutations causing pulmonary arterial hypertension Apirat Chaikuad, Chancievan Thangaratnarajah, Frank von Delft, Alex N Bullock Scientific Reports 2019 vol 9, issue 1 10.1038/s41598-019-54830-7
3 Article in Journal All-Photochemical Rotation of Molecular Motors with a Phosphorus Stereoelement Boursalian, Gregory B.; Nijboer, Eise R.; Dorel, Ruth; Pfeifer, Lukas; Markovitch, Omer; Blokhuis, Alex; Feringa, Ben L. American Chemical Society 2020 142, 39 10.1021/jacs.0c08249
4 Article in Journal Bacterial multi-solute transporters D J Slotboom*, T W Ettema, M Nijland, C Thangaratnarajah FEBS Letters 2020 vol 594, issue 23 10.1002/1873-3468.13912
5 Publication in Conference proceedings/Workshop EXO-ATMOS: A scalable grid of hypothetical planetary atmospheres Chopra, Aditya ; Bell, Aaron ; Fawcett, William ; Talebi, Rodd ; Angerhausen, Daniel ; Güneş Baydin, Atılım ; Berea, Anamaria ; Cabrol, Nathalie A. ; Kempes, Christopher P. ; Mascaro, Massimo 14th Europlanet Science Congress 2020, held virtually, 21 September 2020 – 9 October, 2020. 2020 10.5194/epsc2020-664
6 Article in Journal Hybrid Biodegradable Nanomotors through Compartmentalized Synthesis Imke AB Pijpers, Shoupeng Cao, Antoni Llopis-Lorente, Jianzhi Zhu, Shidong Song, Rick RM Joosten, Fenghua Meng, Heiner Friedrich, David S Williams, Samuel Sánchez, Jan CM van Hest, Loai KEA Abdelmohsen Nano Letters 2020 issue 20 / 6 10.1021/acs.nanolett.0c01268
7 Article in Journal Mutational and structural analysis of an ancestral fungal dye‐decolorizing peroxidase Ulises A. Zitare, Mohamed H. Habib, Henriette Rozeboom, Maria L. Mascotti, Smilja Todorovic, Marco W. Fraaije The FEBS Journal 2020 10.1111/febs.15687
8 Article in Journal The SLC25 Carrier Family: Important Transport Proteins in Mitochondrial Physiology and Pathology Edmund R. S. Kunji, Martin S. King, Jonathan J. Ruprecht, Chancievan Thangaratnarajah Physiology 2020 35/5 10.1152/physiol.00009.2020
9 Article in Journal Universal motifs and the diversity of autocatalytic systems Alex Blokhuis*, David Lacoste, Philippe Nghe Proceedings of the National Academy of Sciences of the United States of America 2020 volume 117, nr 41 10.1073/pnas.2013527117
10 Article in Journal Ancestral reconstruction of mammalian FMO1 enables structural determination, revealing unique features that explain its catalytic properties Gautier Bailleul, Callum R. Nicoll, María Laura Mascotti, Andrea Mattevi, Marco W. Fraaije Journal of Biological Chemistry 2021 296 10.1074/jbc.ra120.016297
11 Article in Journal Author Correction: CRISPR-based transcriptional activation tool for silent genes in filamentous fungi László Mózsik, Mirthe Hoekzema, Niels A.W. de Kok, Roel A.L. Bovenberg, Yvonne Nygård, Arnold J.M. Driessen Scientific Reports 2021 vol 11, issue 1 10.1038/s41598-021-99654-6
12 Article in Journal Complexes with Atomic Gold Ions: Efficient Bis-Ligand Formation Felix Duensing, Elisabeth Gruber, Paul Martini, Marcelo Goulart, Michael Gatchell, Bilal Rasul, Olof Echt, Fabio Zappa, Masoomeh Mahmoodi-Darian*, Paul Scheier Molecules 2021 volume 26 10.3390/molecules26123484
13 Article in Journal CRISPR-based transcriptional activation tool for silent genes in filamentous fungi László Mózsik, Mirthe Hoekzema, Niels A W de Kok, Roel A L Bovenberg, Yvonne Nygård, Arnold J M Driessen Scientific Reports 2021 vol 11, issue 1 10.1038/s41598-020-80864-3
14 Instititutional access Engineering chemical communication between micro/nanosystems Beatriz de Luis, Antoni Llopis-Lorente, Félix Sancenón and Ramón Martínez-Máñez Chemical Society Reviews 2021 10 Jun 2021 10.1039/d0cs01048k
15 Article in Journal Insights into the bilayer-mediated toppling mechanism of a folate-specific ECF transporter by cryo-EM Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino, Dirk J. Slotboom Proceedings of the National Academy of Sciences 2021 118/34 10.1073/pnas.2105014118
16 Article in Journal On the diversity of

F
420

‐dependent oxidoreductases: A sequence‐ and structure‐based classification

 María Laura Mascotti, Maximiliano Juri Ayub, Marco W. Fraaije Proteins: Structure, Function, and Bioinformatics 2021 89/11 10.1002/prot.26170
17 Instititutional access RNA-Protein Interactions in Molecular Life and Health: A Computational Approach Driver, Mark D.; Onck, Patrick R. Biophysical Journal, 120(3), 81A – 81A. CELL PRESS 2021 120 10.1016/j.bpj.2020.11.702
18 Article in Journal Stoichiometry alone can steer supramolecular systems on complex free energy surfaces with high selectivity Dávid Komáromy*, Theodora Tiemersma-Wegman, Johan Kemmink, Giuseppe Portale, Paul R. Adamski, Alex Blokhuis, Friso S. Aalbers, Ivana Marić, Guillermo Monreal Santiago, Jim Ottelé, Ankush Sood, Vittorio Saggiomo, Bin Liu, Pieter van der Meulen, Sijbren Otto Chem 2021 volume 7 10.1016/j.chempr.2021.05.020
19 Article in Journal Survival of Exomoons Around Exoplanets V. Dobos, S. Charnoz, A. Pál, A. Roque-Bernard, Gy. M. Szabó Publications of the Astronomical Society of the Pacific 2021 133/1027 10.1088/1538-3873/abfe04
20 Publication in Conference proceedings/Workshop The Biological Overview Effect Lineweaver, Charles H. ; Chopra, Aditya Astrophysics and Space Science Proceedings 2021 volume 58 10.1007/978-3-030-70482-7_11
21 Article in Journal A conserved sequence motif in the E. coli soluble FAD-containing pyridine nucleotide transhydrogenase is important for reaction efficiency Michele Partipilo; Guang Yang; Maria Laura Mascotti; Hein J. Wijma; Dirk Jan Slotboom; Marco W. Fraaije The Journal of Biological Chemistry 2022 298, issue 9 10.1016/j.jbc.2022.102304
22 Article in Journal A target list for searching for habitable exomoons Vera Dobos, András Haris, Inga E. E. Kamp, Floris F. S. van der Tak Monthly Notices of the Royal Astronomical Society 2022 Volume 513, Issue 4 10.1093/mnras/stac1180
23 Article in Journal Cryo-EM studies of membrane proteins at 200 keV Chancievan Thangaratnarajah, Jan Rheinberger, Cristina Paulino Current Opinion in Structural Biology 2022 volume 76 10.1016/j.sbi.2022.102440
24 Article in Journal Endocytosis-like DNA uptake by cell wall-deficient bacteria Renée Kapteijn, Shraddha Shitut, Dennis Aschmann, Le Zhang, Marit de Beer, Deniz Daviran, Rona Roverts, Anat Akiva, Gilles P. van Wezel, Alexander Kros & Dennis Claessen Nature Communications 2022 volume 13, issue 1 10.1038/s41467-022-33054-w
25 Article in Journal Evolutionary and structural analyses of the NADPH oxidase family in eukaryotes reveal an initial calcium dependency Marta Massari; Callum R. Nicoll; Sara Marchese; Andrea Mattevi; Maria Laura Mascotti Redox Biology 2022 volume 56, October 10.1016/j.redox.2022.102436
26 Instititutional access From the mysteries of the fly agaric: The toxin of the Amanita muscaria (Das Gift des Fliegenpilzes: Von den Geheimnissen des Narrenschwamms) Sebastian Obermaier*, Michael Müller Chemie in unserer zeit 2022 vol 56 10.1002/ciuz.202000085
27 Article in Journal Horseradish Peroxidase-Functionalized Gold Nanoconjugates for Breast Cancer Treatment Based on Enzyme Prodrug Therapy Gema Vivo-Llorca; Ángela Morellá-Aucejo; Alba García-Fernández; Paula Díez; Antoni Llopis-Lorente; Mar Orzáez; Ramón Martínez-Máñez International Journal of Nanomedicine 2022 17 10.2147/ijn.s323802
28 Article in Journal Key features of inhibitor binding to the human mitochondrial pyruvate carrier hetero-dimer Sotiria Tavoulari*, Tom J J Schirris, Vasiliki Mavridou, Chancievan Thangaratnarajah, Martin S King, Daniel T D Jones, Shujing Ding, Ian M Fearnley, Edmund R S Kunji Molecular metabolism 2022 vol 60 10.1016/j.molmet.2022.101469
29 Article in Journal Long-term tidal evolution of the TRAPPIST-1 system R. Brasser, G. Pichierri, V. Dobos, A. C. Barr Monthly Notices of the Royal Astronomical Society 2022 Volume 515, Issue 2 10.1093/mnras/stac1907
30 Article in Journal Metabolic dynamics during the cell cycle Andre Zylstra, Matthias Heinemann Current Opinion in Systems Biology 2022 10.1016/j.coisb.2022.100415
31 Article in Journal Motility of Active Microparticles in Cell-Sized Lipid Vesicles Shidong Song; Antoni Llopis-Lorente; Alexander F. Mason; Loai K. E. A. Abdelmohsen; Jan C. M. van Hest Journal of the American Chemical Society 2022 volume 144, issue 30 10.1021/jacs.2c05232
32 Article in Journal Natamycin sequesters ergosterol and interferes with substrate transport by the lysine transporter Lyp1 from yeast Maria Szomek; Peter Reinholdt; Hanna-Loisa Walther; Holger A. Scheidt; Peter Müller; Sebastian Obermaier; Bert Poolman; Jacob Kongsted; Daniel Wüstner Biochimica et Biophysica Acta – Biomembranes, 1864(11):184012 2022 3 10.1016/j.bbamem.2022.184012
33 Instititutional access Non-Linear Effects in Asymmetric Catalysis: Impact of Catalyst Precipitation Yannick Geiger, Stéphane Bellemin-Laponnaz ChemCatChem 2022 vol 14, issue 9 10.1002/cctc.202200165
34 Article in Journal One Soai reaction, two mechanisms? Yannick Geiger Chemical Society Reviews 2022 10.1039/d1cs01038g
35 Article in Journal Pathogenic variants of the mitochondrial aspartate/glutamate carrier causing citrin deficiency Sotiria Tavoulari, Denis Lacabanne, Chancievan Thangaratnarajah, Edmund R S Kunji* Trends in endocrinology and metabolism 2022 vol 33, issue 8 10.1016/j.tem.2022.05.002
36 Article in Journal Quorum sensing communication between lipid-based artificial cells Antoni Llopis-Lorente; Bastiaan C. Buddingh’; R. Martínez-Máñez; Jan C. M. van Hest; Loai K. E. Abdelmohsen Chemical Communications, 59(5), 579 – 582. Royal Society of Chemistry 2022 Volume 59, Issue 5 10.1039/d2cc05367e
37 Instititutional access Soft-x-ray spectroscopy of coronene+ and (coronene+H)+ cations: The influence of hydrogenation on electronic structure and photofragmentation Yining Huo; Mónica K. Espinoza Cangahuala; Marcelo Goulart; Vicente Zamudio-Bayer; Markus Kubin; Martin Timm; J. Tobias Lau; Bernd von Issendorff; Ronnie Hoekstra; Shirin Faraji; Thomas Schlathölter Physical Review A – Atomic, Molecular, and Optical Physics 2022 volume 106, issue 6 10.1103/physreva.106.063104
38 Article in Journal Turning Enantiomeric Relationships into Diastereomeric Ones: Self-Resolving α-Ureidophosphonates and Their Organocatalytic Enantioselective Synthesis Vanda Dašková; Damián Padín; Ben L. Feringa Journal of the American Chemical Society 2022 8, weekly 10.1021/jacs.2c10911
39 Article in Journal Achieving Control in Micro-/Nanomotor Mobility Alexander D. Fusi, Yudong Li, Dr. A. Llopis-Lorente, Dr. Tania Patiño, Prof. Dr. Jan C. M. van Hest, Dr. Loai K. E. A. Abdelmohsen Angewandte ChemieBron:Wiley Online Library: Complete Journals 2023 volume 135, issue 5 10.1002/ange.202214754
40 Article in Journal An X-ray spectroscopy study of structural stability of superhydrogenated pyrene derivatives Yining Huo, Mónica Espinoza Cangahuala, Vicente Zamudio-Bayer, Marcelo Goulart, Markus Kubin, Martin Timm, J Tobias Lau, Bernd von Issendorff, Ronnie Hoekstra, Shirin Faraji, Thomas Schlathölter Monthly Notices of the Royal Astronomical Society 2023 523 /1 10.1093/mnras/stad1341
41 Article in Journal Asymmetric Synthesis of Chiral‐at‐P Alkenylphosphonamidates through Nickel‐Catalyzed C−P Coupling of Phosphoramidites and Alkenyl Halides Xiao‐Bing Chen; Damián Padín; Charlotte N. Stindt; Ben L. Feringa Angewandte Chemie (International ed. in English 2023 vol 62, number 33 10.1002/ange.202307450
42 Article in Journal Chemical Cascading Between Polymersomal Nanoreactor Populations Yigit Altay, Antoni Llopis-Lorente, Loai K. E. A. Abdelmohsen, Jan C.M. van Hest Macromolecular Chemistry and Physics 2023 Volume 224, Issue 1 10.1002/macp.202200269
43 Article in Journal Enantioselective Self-Replicators Shuo Yang; Yannick Geiger; Marc Geerts; Marcel J. Eleveld; Armin Kiani; Sijbren Otto Journal of the American Chemical Society 2023 volume 145, issue 30 10.1021/jacs.3c05472
44 Article in Journal Evolution of enzyme functionality in the flavin-containing monooxygenases Gautier Bailleul, Guang Yang, Callum R Nicoll, Andrea Mattevi, Marco W Fraaije, Maria Laura Mascotti Nature Communications 2023 ’14:1042 10.1038/s41467-023-36756-x
45 Article in Journal Exploring Intra- and Inter-Regional Interactions in the IDP α-Synuclein Using smFRET and MD Simulations Gobert Heesink; Mirjam J. Marseille; Mohammad A. A. Fakhree; Mark D. Driver; Kirsten A. van Leijenhorst-Groener; Patrick R. Onck; Christian Blum; Mireille M.A.E. Claessens Biomacromolecules 2023 volume 24, issue 8 10.1021/acs.biomac.3c00404
46 Article in Journal Expulsion mechanism of the substrate-translocating subunit in ECF transporters Chancievan Thangaratnarajah, Mark Nijland, Luís Borges-Araújo, Aike Jeucken, Jan Rheinberger, Siewert J. Marrink, Paulo C. T. Souza, Cristina Paulino & Dirk J. Slotboom Nature Communications 2023 issue 1, article 4484 10.1038/s41467-023-40266-1
47 Article in Journal Identification and characterization of archaeal and bacterial F420-dependent thioredoxin reductases Guang Yang, Hein J Wijma, Henriëtte J Rozeboom, Maria Laura Mascotti, Marco W Fraaije The FEBS Journal 2023 volume 290, issue 19 10.1111/febs.16896
48 Article in Journal Impact of ancestral sequence reconstruction on mechanistic and structural enzymology Callum R Nicoll, Marta Massari, Marco W Fraaije, Maria Laura Mascotti, Andrea Mattevi Current Opinion in Structural Biology 2023 volume 82 10.1016/j.sbi.2023.102669
49 Article in Journal In vitro and in vivo evaluation of clinically-approved ionizable cationic lipids shows divergent results between mRNA transfection and vaccine efficacy Oscar Escalona-Rayo , Ye Zeng , Renzo A. Knol , Thomas J.F. Kock , Dennis Aschmann , Bram Slütter , Alexander Kros Biomedicine & Pharmacotherapy 2023 vol 165 10.1016/j.biopha.2023.115065
50 Article in Journal Investigating the biochemical signatures and physiological roles of the FMO family using molecular phylogeny C. R. Nicoll, M. L. Mascotti BBA Advances 2023 volume 4 10.1016/j.bbadva.2023.100108
51 Chapter in book Io as an Analog for Tidally Heated Exoplanets Amy C. Barr, Ramon Brasser, Vera Dobos & Lynnae C. Quick Part of the book series: Astrophysics and Space Science Library ((ASSL,volume 468)) 2023 10.1007/978-3-031-25670-7_10
52 Instititutional access Multi-site-specific polymer grafting from nucleic acids Sandeepa K. Vittala 1, Roxanne E. Kieltyka Chem 2023 Vol 9 , issue 11 10.1016/j.chempr.2023.10.012
53 Other PyATMOS: A Scalable Grid of Hypothetical Planetary Atmospheres Chopra, Aditya ; Bell, Aaron C ; Fawcett, William ; Talebi, Rodd ; Angerhausen, Daniel ; Güneş Baydin, Atılım ; Berea, Anamaria ; Cabrol, Nathalie A. ; Kempes, Christopher ; Mascaro, Massimo astro-ph > arXiv:2308.10624 2023 10.48550/arxiv.2308.10624
54 Article in Journal Residues Ala420 and Glu466 allow for efficient catalysis of syringyl derivatives Daniel Eggerichs; Nils Weindorf; Maria Laura Mascotti; Natalie Welzel; Marco W. Fraaije; Dirk Tischler The Journal of Biological Chemistry 2023 volume 13, issue 7 10.1016/j.jbc.2023.104898
55 Article in Journal Role of Curvature-Sensing Proteins in the Uptake of Nanoparticles with Different Mechanical Properties Daphne Montizaan, Catherine Saunders, Keni Yang, Sajitha Sasidharan, Sourav Maity, Catharina Reker-Smit, Marc C.A. Stuart, Costanza Montis, Debora Berti, Wouter H. Roos, Anna Salvati Small 2023 vol 19 , issue 39 10.1002/smll.202303267
56 Article in Journal Structural properties of the HNF-1A transactivation domain Laura Kind; Mark Driver; Arne Raasakka; Patrick R. Onck; Pål Rasmus Njølstad; Thomas Arnesen; Petri Kursula JournalFrontiers in Molecular Biosciences 2023 volume 10 10.1101/2023.06.23.546236
57 Article in Journal Switching the Mode of Drug Release from a Reaction-Coupled Low-Molecular-Weight Gelator System by Altering Its Reaction Pathway Willem E. M. Noteborn; Sandeepa K. Vittala; Maria Broto Torredemer; Chandan Maity; Frank Versluis; Rienk Eelkema; Roxanne E. Kieltyka Biomacromolecules, 24(1), 377 – 386. AMER CHEMICAL SOC 2023 24 10.1021/acs.biomac.2c01197
58 Article in Journal Temporal segregation of biosynthetic processes is responsible for metabolic oscillations during the budding yeast cell cycle Vakil Takhaveev; Serdar Özsezen; Edward N. Smith; Andre Zylstra; Marten L. Chaillet; Haoqi Chen; Alexandros Papagiannakis; Andreas Milias-Argeitis; Matthias Heinemann Nature Metabolism 2023 volume 5, issue 2 10.3929/ethz-b-000601600
59 Article in Journal Artificial cells with viscoadaptive behavior based on hydrogel-loaded giant unilamellar vesicles Antoni Llopis-Lorente, Maaike J. G. Schotman, Heorhii V. Humeniuk, Jan C. M. van Hest, Patricia Y. W. Dankers and Loai K. E. A. Abdelmohsen Chemical Science 2024 Issue 2, 2024 10.1039/d3sc04687g
60 Article in Journal Bidirectional ATP-driven transport of cobalamin by the mycobacterial ABC transporter BacA Mark Nijland; Solène N. Lefebvre; Chancievan Thangaratnarajah; Dirk J. Slotboom Nature Communications 2024 issue 15 / 1 https://www.nature.com/articles/s41467-024-46917-1
61 Article in Journal Light-driven eco-evolutionary dynamics in a synthetic replicator system Kai Liu, Alex Blokhuis, Chris van Ewijk, Armin Kiani, Juntian Wu, Wouter H Roos, Sijbren Otto Nature Chemistry 2024 16 10.1038/s41557-023-01301-2
62 Article in Journal Lipid-Based Nanoparticle Functionalization with Coiled-Coil Peptides for In Vitro and In Vivo Drug Delivery Dennis Aschmann; Renzo A. Knol; Alexander Kros Accounts of Chemical Research 2024  57, 8 https://doi.org/10.1021/acs.accounts.3c00769
63 Instititutional access Small-molecule autocatalysis drives compartment growth, competition and reproduction Heng Lu, Alex Blokhuis, Rebecca Turk-MacLeod, Jayaprakash Karuppusamy, Andrea Franconi, Gabrielle Woronoff, Cyrille Jeancolas, Afshin Abrishamkar, Estelle Loire, Fabien Ferrage, Philippe Pelupessy, Ludovic Jullien, Eörs Szathmary, Philippe Nghe & Andrew D. Griffiths Nature Chemistry 2024 nr 16 10.1038/s41557-023-01276-0
64 Article in Journal Water content of rocky exoplanets in the habitable zone Ádám Boldog, Vera Dobos, László L. Kiss, Marijn van der Perk and Amy C. Barr Astronomy & Astrophysics 2024 vol 681 10.1051/0004-6361/202346988
65 Article in Journal Fitness landscape of substrate-adaptive mutations in evolved amino acid-polyamine-organocation transporters Foteini Karapanagioti, Úlfur Águst Atlason, Dirk J Slotboom, Bert Poolman, Sebastian Obermaier eLife 2024 13 10.7554/elife.93971.3
66 Article in Journal The topological shadow of F1-geometry: congruence spaces Oliver Lorscheid, Samarpita Ray Mathematische Zeitschrift 2024 306 10.1007/s00209-023-03425-0